质粒名称: | pAAV-Ef1a-DIO hChR2(E123T/T159C)-mCherry |
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出品公司: | Addgene |
目录编号: | 35510 |
存储实验室: | Karl Deisseroth |
载体骨架基本信息 |
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载体名称: | pAAV |
载体出品公司: | Stratagene |
载体抗性: | 氨苄青霉素 |
空载体大小: | 5605 bp |
完整质粒大小: | -- |
载体修饰: | 添加Ef1a启动子、lox位点和WPRE |
载体类型: | 哺乳细胞表达,AAV |
筛选标记: | -- |
高拷贝/低拷贝: | 高拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | hChR2 |
物种来源: | 莱茵衣藻 |
插入大小: | 1646 bp |
基因突变: | E123T and T159C |
GenBank编号 | -- |
启动子 | Ef1a |
标签/融合蛋白: | mCherry(插入件上的C端子) |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | AscI(未破坏) |
3' 克隆位点: | NheI (未破坏) |
5' 测序引物 | CACCCACACAAAGGAAAAGGGCC |
3' 测序引物 | GCAATAGCATGATACAAAGG |
文献引用方法 |
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材料和方法部分: | pAAV-Ef1a-DIO hChR2(E123T/T159C)-mCherry was a gift from Karl Deisseroth (Addgene plasmid # 35510 ; http://n2t.net/addgene:35510 ; RRID:Addgene_35510) |
参考文献部分: | Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins. Mattis J, Tye KM, Ferenczi EA, Ramakrishnan C, O'Shea DJ, Prakash R, Gunaydin LA, Hyun M, Fenno LE, Gradinaru V, Yizhar O, Deisseroth K. Nat Methods. 2011 Dec 18;9(2):159-72. doi: 10.1038/nmeth.1808. 10.1038/nmeth.1808 PubMed 22179551 |
买家导航
载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pAAV-Ef1a-DIO hChR2(E123T/T159C)-mCherry 7241 bp ds-DNA circular SYN 18-JUN-2019 DEFINITION AAV expression of Ef1a-driven, cre-dependent, hChR2 variant for ultrafast optogenetic control.. ACCESSION . VERSION . KEYWORDS pAAV-Ef1a-DIO hChR2(E123T/T159C)-mCherry SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 7241) AUTHORS Mattis J, Tye KM, Ferenczi EA, Ramakrishnan C, O'Shea DJ, Prakash R, Gunaydin LA, Hyun M, Fenno LE, Gradinaru V, Yizhar O, Deisseroth K TITLE Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins. JOURNAL Nat Methods. 2011 Dec 18;9(2):159-72. doi: 10.1038/nmeth.1808. PUBMED 22179551 REFERENCE 2 (bases 1 to 7241) AUTHORS . TITLE Direct Submission JOURNAL Exported Jun 18, 2019 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..7241 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind 32..51 /label=pBR322ori-F /note="pBR322 origin, forward primer" repeat_region 193..322 /label=AAV2 ITR (alternate) /note="Functional equivalent of wild-type AAV2 ITR" promoter 423..1601 /label=EF-1-alpha promoter /note="strong constitutive promoter for human elongation factor EF-1-alpha" intron 654..1592 /label=EF-1-alpha intron A /note="intron upstream of the start codon of human EF-1-alpha" primer_bind 1549..1569 /label=EF1a-F /note="Human elongation factor-1a promoter, forward primer" protein_bind 1632..1665 /label=lox2272 /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GGATACTT). lox2272 sites are compatible with each other, but incompatible with loxP or loxN sites." protein_bind 1716..1749 /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." CDS complement(1761..2468) /codon_start=1 /product="monomeric derivative of DsRed fluorescent protein (Shaner et al., 2004)" /label=mCherry /note="mammalian codon-optimized" /translation="VSKGEEDNMAIIKEFMRFKVHMEGSVNGHEFEIEGEGEGRPYEGT QTAKLKVTKGGPLPFAWDILSPQFMYGSKAYVKHPADIPDYLKLSFPEGFKWERVMNFE DGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKG EIKQRLKLKDGGHYDAEVKTTYKAKKPVQLPGAYNVNIKLDITSHNEDYTIVEQYERAE GRHSTGGMDELYK" primer_bind complement(2039..2058) /label=mCherry-F /note="mCherry, forward primer" primer_bind 2308..2326 /label=mCherry-R /note="mCherry, reverse primer" regulatory 3404..3413 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" protein_bind complement(3418..3451) /label=lox2272 /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GGATACTT). lox2272 sites are compatible with each other, but incompatible with loxP or loxN sites." protein_bind complement(3502..3535) /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." misc_feature 3560..4148 /label=WPRE /note="woodchuck hepatitis virus posttranscriptional regulatory element" primer_bind complement(3613..3633) /label=WPRE-R /note="WPRE, reverse primer" CDS complement(4031..4042) /codon_start=1 /product="Factor Xa recognition and cleavage site" /label=Factor Xa site /translation="IEGR" polyA_signal 4180..4656 /label=hGH poly(A) signal /note="human growth hormone polyadenylation signal" primer_bind complement(4379..4398) /label=hGH-PA-R /note="Human growth hormone terminator, reverse primer" repeat_region 4696..4836 /label=AAV2 ITR /note="inverted terminal repeat of adeno-associated virus serotype 2" repeat_region 4696..4825 /label=AAV2 ITR rep_origin 4911..5366 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(4998..5017) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 5208..5229 /label=F1ori-F /note="F1 origin, forward primer" primer_bind complement(5383..5402) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" primer_bind 5502..5524 /label=pGEX 3' /note="pGEX vectors, reverse primer" primer_bind complement(5562..5580) /label=pBRforEco /note="pBR322 vectors, upsteam of EcoRI site, forward primer" promoter 5648..5752 /gene="bla" /label=AmpR promoter CDS 5753..6613 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(5971..5990) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 6784..131 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" ORIGIN 1 gaacaggaga gcgcacgagg gagcttccag ggggaaacgc ctggtatctt tatagtcctg 61 tcgggtttcg ccacctctga cttgagcgtc gatttttgtg atgctcgtca ggggggcgga 121 gcctatggaa aaacgccagc aacgcggcct ttttacggtt cctggccttt tgctggcctt 181 ttgctcacat gtcctgcagg cagctgcgcg ctcgctcgct cactgaggcc gcccgggcgt 241 cgggcgacct ttggtcgccc ggcctcagtg agcgagcgag cgcgcagaga gggagtggcc 301 aactccatca ctaggggttc ctgcggccgc acgcgtaagc tttgcaaaga tggataaagt 361 tttaaacaga gaggaatctt tgcagctaat ggaccttcta ggtcttgaaa ggagtgggaa 421 ttggctccgg tgcccgtcag tgggcagagc gcacatcgcc cacagtcccc gagaagttgg 481 ggggaggggt cggcaattga accggtgcct agagaaggtg gcgcggggta aactgggaaa 541 gtgatgtcgt gtactggctc cgcctttttc ccgagggtgg gggagaaccg tatataagtg 601 cagtagtcgc cgtgaacgtt ctttttcgca acgggtttgc cgccagaaca caggtaagtg 661 ccgtgtgtgg ttcccgcggg cctggcctct ttacgggtta tggcccttgc gtgccttgaa 721 ttacttccac ctggctgcag tacgtgattc ttgatcccga gcttcgggtt ggaagtgggt 781 gggagagttc gaggccttgc gcttaaggag ccccttcgcc tcgtgcttga gttgaggcct 841 ggcctgggcg ctggggccgc cgcgtgcgaa tctggtggca ccttcgcgcc tgtctcgctg 901 ctttcgataa gtctctagcc atttaaaatt tttgatgacc tgctgcgacg ctttttttct 961 ggcaagatag tcttgtaaat gcgggccaag atctgcacac tggtatttcg gtttttgggg 1021 ccgcgggcgg cgacggggcc cgtgcgtccc agcgcacatg ttcggcgagg cggggcctgc 1081 gagcgcggcc accgagaatc ggacgggggt agtctcaagc tggccggcct gctctggtgc 1141 ctggcctcgc gccgccgtgt atcgccccgc cctgggcggc aaggctggcc cggtcggcac 1201 cagttgcgtg agcggaaaga tggccgcttc ccggccctgc tgcagggagc tcaaaatgga 1261 ggacgcggcg ctcgggagag cgggcgggtg agtcacccac acaaaggaaa agggcctttc 1321 cgtcctcagc cgtcgcttca tgtgactcca cggagtaccg ggcgccgtcc aggcacctcg 1381 attagttctc gagcttttgg agtacgtcgt ctttaggttg gggggagggg ttttatgcga 1441 tggagtttcc ccacactgag tgggtggaga ctgaagttag gccagcttgg cacttgatgt 1501 aattctcctt ggaatttgcc ctttttgagt ttggatcttg gttcattctc aagcctcaga 1561 cagtggttca aagttttttt cttccatttc aggtgtcgtg aggtaccgga tcctctagag 1621 tcgactccgg aataacttcg tataggatac tttatacgaa gttatgcaga atggtagctg 1681 gattgtagct gctattagca atatgaaacc tcttaataac ttcgtatagc atacattata 1741 cgaagttatg gcgcgcccta ttacttgtac agctcgtcca tgccgccggt ggagtggcgg 1801 ccctcggcgc gttcgtactg ttccacgatg gtgtagtcct cgttgtggga ggtgatgtcc 1861 aacttgatgt tgacgttgta ggcgccgggc agctgcacgg gcttcttggc cttgtaggtg 1921 gtcttgacct cagcgtcgta gtggccgccg tccttcagct tcagcctctg cttgatctcg 1981 cccttcaggg cgccgtcctc ggggtacatc cgctcggagg aggcctccca gcccatggtc 2041 ttcttctgca ttacggggcc gtcggagggg aagttggtgc cgcgcagctt caccttgtag 2101 atgaactcgc cgtcctgcag ggaggagtcc tgggtcacgg tcaccacgcc gccgtcctcg 2161 aagttcatca cgcgctccca cttgaagccc tcggggaagg acagcttcaa gtagtcgggg 2221 atgtcggcgg ggtgcttcac gtaggccttg gagccgtaca tgaactgagg ggacaggatg 2281 tcccaggcga agggcagggg gccacccttg gtcaccttca gcttggcggt ctgggtgccc 2341 tcgtaggggc ggccctcgcc ctcgccctcg atctcgaact cgtggccgtt cacggagccc 2401 tccatgtgca ccttgaagcg catgaactcc ttgatgatgg ccatgttatc ctcctcgccc 2461 ttgctcacgg cggccgctgg cacggctccg gcctcggctt cgtcttcgac gagagtctcg 2521 acctcgatct ccgttccgcc gatgttcagt ttggtggttt tgcggatatc tccgtgaatc 2581 aatatgtgct cgtggatcag gacgcgcagg tagtgtccca acaaccccca acaattttta 2641 ctcatcagat caataatcgt gtgacctacg gtggagccat agacgctcag gacgccaaaa 2701 ccttcgggcc ccaaaatgaa gagaattggg aacatacccc agctcacgaa aaacagccat 2761 gccatgccgg tcacgacctg gcggcaccga ccctttggca cagtatgata accctcgata 2821 tatgctttgg cggcgtgaaa aaatgtgttc gcgccatagc acaatccaag acaaaagaag 2881 atgactttaa catagccggt tgccatggcg ctggtagccc cccacacgat acacccgatg 2941 tctgagacaa ggagtcccat ggttctcctg ctgtagtcgt tgctcaggcc ggtgaggttg 3001 ctcaggtgga taaggatgac aggacaagtg agcagccagg ttgcatagcg cagccactgc 3061 acccggtgtc ctgtggcaag gtagagcata gagggattct taaactcaaa aaagaactcg 3121 agaatcacct taaccatttc aatggcgcac acatagatct cctcccagcc gcatgtagat 3181 ttccaggttt ggtaggcata gaacatcagc agcaaaatgc tgaatcctgc tgcaagccac 3241 tgcaggacat ttgacgcggt ctgagcgccg ttcgtgccgc gagattcaat ccatccggca 3301 cagtaacatt gatcctcagg gaccaggacg gacccgttca ccaccacagg attagtaacg 3361 aacaaaagtt cgcgtccgac ggcagacaaa gcgccgccat agtccatggt ggctagcata 3421 acttcgtata aagtatccta tacgaagtta tttgccttaa cccagaaatt atcactgtta 3481 ttctttagaa tggtgcaaag aataacttcg tataatgtat gctatacgaa gttatgaatt 3541 cgatatcaag cttatcgata atcaacctct ggattacaaa atttgtgaaa gattgactgg 3601 tattcttaac tatgttgctc cttttacgct atgtggatac gctgctttaa tgcctttgta 3661 tcatgctatt gcttcccgta tggctttcat tttctcctcc ttgtataaat cctggttgct 3721 gtctctttat gaggagttgt ggcccgttgt caggcaacgt ggcgtggtgt gcactgtgtt 3781 tgctgacgca acccccactg gttggggcat tgccaccacc tgtcagctcc tttccgggac 3841 tttcgctttc cccctcccta ttgccacggc ggaactcatc gccgcctgcc ttgcccgctg 3901 ctggacaggg gctcggctgt tgggcactga caattccgtg gtgttgtcgg ggaaatcatc 3961 gtcctttcct tggctgctcg cctatgttgc cacctggatt ctgcgcggga cgtccttctg 4021 ctacgtccct tcggccctca atccagcgga ccttccttcc cgcggcctgc tgccggctct 4081 gcggcctctt ccgcgtcttc gccttcgccc tcagacgagt cggatctccc tttgggccgc 4141 ctccccgcat cgataccgag cgctgctcga gagatctacg ggtggcatcc ctgtgacccc 4201 tccccagtgc ctctcctggc cctggaagtt gccactccag tgcccaccag ccttgtccta 4261 ataaaattaa gttgcatcat tttgtctgac taggtgtcct tctataatat tatggggtgg 4321 aggggggtgg tatggagcaa ggggcaagtt gggaagacaa cctgtagggc ctgcggggtc 4381 tattgggaac caagctggag tgcagtggca caatcttggc tcactgcaat ctccgcctcc 4441 tgggttcaag cgattctcct gcctcagcct cccgagttgt tgggattcca ggcatgcatg 4501 accaggctca gctaattttt gtttttttgg tagagacggg gtttcaccat attggccagg 4561 ctggtctcca actcctaatc tcaggtgatc tacccacctt ggcctcccaa attgctggga 4621 ttacaggcgt gaaccactgc tcccttccct gtccttctga ttttgtaggt aaccacgtgc 4681 ggaccgagcg gccgcaggaa cccctagtga tggagttggc cactccctct ctgcgcgctc 4741 gctcgctcac tgaggccggg cgaccaaagg tcgcccgacg cccgggcttt gcccgggcgg 4801 cctcagtgag cgagcgagcg cgcagctgcc tgcaggggcg cctgatgcgg tattttctcc 4861 ttacgcatct gtgcggtatt tcacaccgca tacgtcaaag caaccatagt acgcgccctg 4921 tagcggcgca ttaagcgcgg cgggtgtggt ggttacgcgc agcgtgaccg ctacacttgc 4981 cagcgcctta gcgcccgctc ctttcgcttt cttcccttcc tttctcgcca cgttcgccgg 5041 ctttccccgt caagctctaa atcgggggct ccctttaggg ttccgattta gtgctttacg 5101 gcacctcgac cccaaaaaac ttgatttggg tgatggttca cgtagtgggc catcgccctg 5161 atagacggtt tttcgccctt tgacgttgga gtccacgttc tttaatagtg gactcttgtt 5221 ccaaactgga acaacactca actctatctc gggctattct tttgatttat aagggatttt 5281 gccgatttcg gtctattggt taaaaaatga gctgatttaa caaaaattta acgcgaattt 5341 taacaaaata ttaacgttta caattttatg gtgcactctc agtacaatct gctctgatgc 5401 cgcatagtta agccagcccc gacacccgcc aacacccgct gacgcgccct gacgggcttg 5461 tctgctcccg gcatccgctt acagacaagc tgtgaccgtc tccgggagct gcatgtgtca 5521 gaggttttca ccgtcatcac cgaaacgcgc gagacgaaag ggcctcgtga tacgcctatt 5581 tttataggtt aatgtcatga taataatggt ttcttagacg tcaggtggca cttttcgggg 5641 aaatgtgcgc ggaaccccta tttgtttatt tttctaaata cattcaaata tgtatccgct 5701 catgagacaa taaccctgat aaatgcttca ataatattga aaaaggaaga gtatgagtat 5761 tcaacatttc cgtgtcgccc ttattccctt ttttgcggca ttttgccttc ctgtttttgc 5821 tcacccagaa acgctggtga aagtaaaaga tgctgaagat cagttgggtg cacgagtggg 5881 ttacatcgaa ctggatctca acagcggtaa gatccttgag agttttcgcc ccgaagaacg 5941 ttttccaatg atgagcactt ttaaagttct gctatgtggc gcggtattat cccgtattga 6001 cgccgggcaa gagcaactcg gtcgccgcat acactattct cagaatgact tggttgagta 6061 ctcaccagtc acagaaaagc atcttacgga tggcatgaca gtaagagaat tatgcagtgc 6121 tgccataacc atgagtgata acactgcggc caacttactt ctgacaacga tcggaggacc 6181 gaaggagcta accgcttttt tgcacaacat gggggatcat gtaactcgcc ttgatcgttg 6241 ggaaccggag ctgaatgaag ccataccaaa cgacgagcgt gacaccacga tgcctgtagc 6301 aatggcaaca acgttgcgca aactattaac tggcgaacta cttactctag cttcccggca 6361 acaattaata gactggatgg aggcggataa agttgcagga ccacttctgc gctcggccct 6421 tccggctggc tggtttattg ctgataaatc tggagccggt gagcgtgggt ctcgcggtat 6481 cattgcagca ctggggccag atggtaagcc ctcccgtatc gtagttatct acacgacggg 6541 gagtcaggca actatggatg aacgaaatag acagatcgct gagataggtg cctcactgat 6601 taagcattgg taactgtcag accaagttta ctcatatata ctttagattg atttaaaact 6661 tcatttttaa tttaaaagga tctaggtgaa gatccttttt gataatctca tgaccaaaat 6721 cccttaacgt gagttttcgt tccactgagc gtcagacccc gtagaaaaga tcaaaggatc 6781 ttcttgagat cctttttttc tgcgcgtaat ctgctgcttg caaacaaaaa aaccaccgct 6841 accagcggtg gtttgtttgc cggatcaaga gctaccaact ctttttccga aggtaactgg 6901 cttcagcaga gcgcagatac caaatactgt tcttctagtg tagccgtagt taggccacca 6961 cttcaagaac tctgtagcac cgcctacata cctcgctctg ctaatcctgt taccagtggc 7021 tgctgccagt ggcgataagt cgtgtcttac cgggttggac tcaagacgat agttaccgga 7081 taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca cagcccagct tggagcgaac 7141 gacctacacc gaactgagat acctacagcg tgagctatga gaaagcgcca cgcttcccga 7201 agggagaaag gcggacaggt atccggtaag cggcagggtc g //